IL_8SCB_242

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGGA*U(PSU)G

Length

7 nucleotides

Bulged bases

8SCB|1|9|G|1207

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_242 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2009

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8SCB|1|9|C|1205
8SCB|1|9|G|1206
8SCB|1|9|G|1207
8SCB|1|9|A|1208
*
8SCB|1|9|U|1691
8SCB|1|9|PSU|1692
8SCB|1|9|G|1693

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain CC

uS5

Chain aa

40S ribosomal protein S26

Chain hh

mRNA