IL_8SCB_245

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CC(PSU)G*CGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_245 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.294

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8SCB|1|9|C|1230
8SCB|1|9|C|1231
8SCB|1|9|PSU|1232
8SCB|1|9|G|1233
*
8SCB|1|9|C|1525
8SCB|1|9|G|1526
8SCB|1|9|C|1527
8SCB|1|9|G|1528

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain QQ

uS9

Chain SS

uS13

Chain TT

eS19