IL_8SCB_259

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAA*U(PSU)A

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_259 not in the Motif Atlas

Geometric match to IL_6CZR_118

Geometric discrepancy: 0.3936

The information below is about IL_6CZR_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

8SCB|1|9|U|1400
8SCB|1|9|A|1401
8SCB|1|9|A|1402
*
8SCB|1|9|U|1444
8SCB|1|9|PSU|1445
8SCB|1|9|A|1446

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain QQ

uS9

Chain UU

uS10

Chain gg

Receptor for Activated C Kinase 1 (RACK1)