IL_8SCB_280

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCC*GAGCG

Length

8 nucleotides

Bulged bases

8SCB|1|9|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_280 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.3291

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8SCB|1|9|C|1750
8SCB|1|9|C|1751
8SCB|1|9|C|1752
*
8SCB|1|9|G|1780
8SCB|1|9|A|1781
8SCB|1|9|G|1782
8SCB|1|9|C|1783
8SCB|1|9|G|1784

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain GG

eS6