IL_8SCB_312

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_312 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.216

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29223.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8SCB|1|9|OMU|116
8SCB|1|9|C|117
8SCB|1|9|C|118
8SCB|1|9|PSU|119
8SCB|1|9|U|120
8SCB|1|9|OMU|121
*
8SCB|1|9|A|343
8SCB|1|9|U|344
8SCB|1|9|U|345
8SCB|1|9|C|346
8SCB|1|9|G|347

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain II

eS8