IL_8SCB_317

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUA*U(A2M)

Length

5 nucleotides

Bulged bases

8SCB|1|9|U|488

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_317 not in the Motif Atlas

Homologous match to IL_8P9A_396

Geometric discrepancy: 0.141

The information below is about IL_8P9A_396

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8SCB|1|9|U|487
8SCB|1|9|U|488
8SCB|1|9|A|489
*
8SCB|1|9|U|511
8SCB|1|9|A2M|512

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain JJ

uS4

Chain YY

40S ribosomal protein S24

Chain jj

ATP binding cassette subfamily E member 1