IL_8SCB_318

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCACU*A(OMG)

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_318 not in the Motif Atlas

Homologous match to IL_8P9A_397

Geometric discrepancy: 0.1007

The information below is about IL_8P9A_397

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

8SCB|1|9|C|491
8SCB|1|9|C|492
8SCB|1|9|A|493
8SCB|1|9|C|494
8SCB|1|9|U|495
*
8SCB|1|9|A|508
8SCB|1|9|OMG|509

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain JJ

uS4

Chain YY

40S ribosomal protein S24