3D structure

PDB id
8SCB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Terminating ribosome with SRI-41315
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
CGGACAGGAUUGACAG*CUUUCUCGAUUCCG
Length
30 nucleotides
Bulged bases
8SCB|1|9|C|1283, 8SCB|1|9|G|1285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8SCB|1|9|C|1279
8SCB|1|9|G|1280
8SCB|1|9|G|1281
8SCB|1|9|A|1282
8SCB|1|9|C|1283
8SCB|1|9|A|1284
8SCB|1|9|G|1285
8SCB|1|9|G|1286
8SCB|1|9|A|1287
8SCB|1|9|U|1288
8SCB|1|9|U|1289
8SCB|1|9|G|1290
8SCB|1|9|A|1291
8SCB|1|9|C|1292
8SCB|1|9|A|1293
8SCB|1|9|G|1294
*
8SCB|1|9|C|1305
8SCB|1|9|U|1306
8SCB|1|9|U|1307
8SCB|1|9|U|1308
8SCB|1|9|C|1309
8SCB|1|9|U|1310
8SCB|1|9|C|1311
8SCB|1|9|G|1312
8SCB|1|9|A|1313
8SCB|1|9|U|1314
8SCB|1|9|U|1315
8SCB|1|9|C|1316
8SCB|1|9|C|1317
8SCB|1|9|G|1318

Current chains

Chain 9
18S_rRNA

Nearby chains

Chain KK
S10_plectin domain-containing protein
Chain MM
eS12
Chain PP
uS19
Chain dd
uS14
Chain ff
eS31

Coloring options:

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