IL_8SCB_327

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

(PSU)GG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_327 not in the Motif Atlas

Homologous match to IL_8P9A_442

Geometric discrepancy: 0.3235

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8SCB|1|9|PSU|1347
8SCB|1|9|G|1348
8SCB|1|9|G|1349
*
8SCB|1|9|C|1380
8SCB|1|9|G|1381
8SCB|1|9|A|1382

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain AA

uS2 (SA)

Chain CC

uS5

Chain DD

Ribosomal protein S3

Chain RR

eS17