IL_8SUP_004

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

8SUP|1|2|A|45, 8SUP|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SUP_004 not in the Motif Atlas

Geometric match to IL_9PN5_145

Geometric discrepancy: 0.1097

The information below is about IL_9PN5_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.4

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8SUP|1|2|G|41
8SUP|1|2|A|42
8SUP|1|2|U|43
8SUP|1|2|U|44
8SUP|1|2|A|45
8SUP|1|2|A|46
8SUP|1|2|G|47
*
8SUP|1|2|C|479
8SUP|1|2|G|480
8SUP|1|2|C|481

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12