IL_8SUP_014

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

8SUP|1|2|U|305, 8SUP|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|C|216
8SUP|1|2|A|217
8SUP|1|2|U|218
8SUP|1|2|U|219
*
8SUP|1|2|A|302
8SUP|1|2|C|303
8SUP|1|2|C|304
8SUP|1|2|U|305
8SUP|1|2|C|306
8SUP|1|2|G|307
8SUP|1|2|G|308
8SUP|1|2|G|309

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain H

eS6

Chain J

eS8