IL_8SUP_021
3D structure
- PDB id
- 8SUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAU*AAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SUP_021 not in the Motif Atlas
- Homologous match to IL_9PN5_163
- Geometric discrepancy: 0.1961
- The information below is about IL_9PN5_163
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 241
Unit IDs
8SUP|1|2|C|459
8SUP|1|2|A|460
8SUP|1|2|U|461
*
8SUP|1|2|A|468
8SUP|1|2|A|469
8SUP|1|2|G|470
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain H
- eS6
- Chain Z
- eS24
Coloring options: