IL_8SUP_030

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8SUP|1|2|A|628, 8SUP|1|2|U|630, 8SUP|1|2|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|G|611
8SUP|1|2|U|612
8SUP|1|2|G|613
8SUP|1|2|C|614
8SUP|1|2|C|615
8SUP|1|2|A|616
8SUP|1|2|G|617
*
8SUP|1|2|C|624
8SUP|1|2|G|625
8SUP|1|2|G|626
8SUP|1|2|U|627
8SUP|1|2|A|628
8SUP|1|2|A|629
8SUP|1|2|U|630
8SUP|1|2|U|631
8SUP|1|2|C|632

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

Eukaryotic translation initiation factor 1A, X-chromosomal

Chain E

uS3

Chain Y

uS12

Chain f

eS30