IL_8SUP_054

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|G|1168
8SUP|1|2|G|1169
8SUP|1|2|A|1170
8SUP|1|2|G|1171
8SUP|1|2|U|1172
8SUP|1|2|A|1173
8SUP|1|2|U|1174
8SUP|1|2|G|1175
*
8SUP|1|2|U|1186
8SUP|1|2|G|1187
8SUP|1|2|A|1188
8SUP|1|2|A|1189
8SUP|1|2|A|1190
8SUP|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Y

uS12

Chain n

eL41