IL_8SUP_056

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCGA*UUGU

Length

9 nucleotides

Bulged bases

8SUP|1|2|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|G|1204
8SUP|1|2|G|1205
8SUP|1|2|C|1206
8SUP|1|2|G|1207
8SUP|1|2|A|1208
*
8SUP|1|2|U|1691
8SUP|1|2|U|1692
8SUP|1|2|G|1693
8SUP|1|2|U|1694

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 3

EMCV mRNA

Chain D

40S ribosomal protein S2

Chain b

eS26