IL_8SUP_056
3D structure
- PDB id
- 8SUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCGA*UUGU
- Length
- 9 nucleotides
- Bulged bases
- 8SUP|1|2|G|1207
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SUP_056 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.1869
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8SUP|1|2|G|1204
8SUP|1|2|G|1205
8SUP|1|2|C|1206
8SUP|1|2|G|1207
8SUP|1|2|A|1208
*
8SUP|1|2|U|1691
8SUP|1|2|U|1692
8SUP|1|2|G|1693
8SUP|1|2|U|1694
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 3
- EMCV mRNA
- Chain D
- 40S ribosomal protein S2
- Chain b
- eS26
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