IL_8SUP_065

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8SUP|1|2|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SUP_065 not in the Motif Atlas

Homologous match to IL_9PN5_203

Geometric discrepancy: 0.1094

The information below is about IL_9PN5_203

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

8SUP|1|2|G|1325
8SUP|1|2|U|1326
8SUP|1|2|G|1327
*
8SUP|1|2|C|1502
8SUP|1|2|C|1503

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain e

uS14