IL_8SUP_067

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

8SUP|1|2|C|1331, 8SUP|1|2|U|1494, 8SUP|1|2|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|U|1329
8SUP|1|2|G|1330
8SUP|1|2|C|1331
8SUP|1|2|A|1332
8SUP|1|2|U|1333
8SUP|1|2|G|1334
8SUP|1|2|G|1335
*
8SUP|1|2|U|1492
8SUP|1|2|C|1493
8SUP|1|2|U|1494
8SUP|1|2|G|1495
8SUP|1|2|U|1496
8SUP|1|2|G|1497
8SUP|1|2|A|1498
8SUP|1|2|U|1499
8SUP|1|2|G|1500

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain L

eS10

Chain V

uS10

Chain e

uS14