IL_8SUP_076

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUCAGCGUG*CCGUUGAACCC

Length

21 nucleotides

Bulged bases

8SUP|1|2|U|1585, 8SUP|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|G|1541
8SUP|1|2|C|1542
8SUP|1|2|U|1543
8SUP|1|2|C|1544
8SUP|1|2|A|1545
8SUP|1|2|G|1546
8SUP|1|2|C|1547
8SUP|1|2|G|1548
8SUP|1|2|U|1549
8SUP|1|2|G|1550
*
8SUP|1|2|C|1582
8SUP|1|2|C|1583
8SUP|1|2|G|1584
8SUP|1|2|U|1585
8SUP|1|2|U|1586
8SUP|1|2|G|1587
8SUP|1|2|A|1588
8SUP|1|2|A|1589
8SUP|1|2|C|1590
8SUP|1|2|C|1591
8SUP|1|2|C|1592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain a

eS25

Chain e

uS14