IL_8SUP_077

3D structure

PDB id

8SUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

8SUP|1|2|C|1553, 8SUP|1|2|C|1554, 8SUP|1|2|U|1555, 8SUP|1|2|A|1556, 8SUP|1|2|A|1580, 8SUP|1|2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SUP|1|2|G|1550
8SUP|1|2|U|1551
8SUP|1|2|G|1552
8SUP|1|2|C|1553
8SUP|1|2|C|1554
8SUP|1|2|U|1555
8SUP|1|2|A|1556
8SUP|1|2|C|1557
8SUP|1|2|C|1558
*
8SUP|1|2|G|1577
8SUP|1|2|U|1578
8SUP|1|2|A|1579
8SUP|1|2|A|1580
8SUP|1|2|C|1581
8SUP|1|2|C|1582

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain L

eS10

Chain V

uS10

Chain e

uS14