IL_8SUP_088
3D structure
- PDB id
- 8SUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 48S translation initiation complex assembled on the encephalomyocarditis virus IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGAU*AGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SUP_088 not in the Motif Atlas
- Homologous match to IL_9H3G_243
- Geometric discrepancy: 0.1192
- The information below is about IL_9H3G_243
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.5
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
8SUP|1|2|C|1742
8SUP|1|2|G|1743
8SUP|1|2|G|1744
8SUP|1|2|A|1745
8SUP|1|2|U|1746
*
8SUP|1|2|A|1788
8SUP|1|2|G|1789
8SUP|1|2|A|1790
8SUP|1|2|A|1791
8SUP|1|2|G|1792
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain H
- eS6
- Chain J
- eS8
Coloring options: