IL_8SYK_004

3D structure

PDB id

8SYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of RNA device 43 truncation mutant 3 (U100C), holo state

Experimental method

X-RAY DIFFRACTION

Resolution

3.06 Å

Loop

Sequence

GUACA*UUC

Length

8 nucleotides

Bulged bases

8SYK|1|D|C|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYK_004 not in the Motif Atlas

Geometric match to IL_2OEU_002

Geometric discrepancy: 0.2619

The information below is about IL_2OEU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89984.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8SYK|1|D|G|12
8SYK|1|D|U|13
8SYK|1|D|A|14
8SYK|1|D|C|15
8SYK|1|D|A|16
*
8SYK|1|D|U|109
8SYK|1|D|U|110
8SYK|1|D|C|111

Current chains

Chain D

RNA device 43 truncation mutant 3 (U100C)

Nearby chains