IL_8SYL_032

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_032 not in the Motif Atlas

Geometric match to IL_9E9Q_004

Geometric discrepancy: 0.3226

The information below is about IL_9E9Q_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8SYL|1|A|G|880
8SYL|1|A|G|881
*
8SYL|1|A|U|895
8SYL|1|A|A|896
8SYL|1|A|C|897

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain w

Transfer RNA; tRNA