IL_8SYL_039
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8SYL|1|A|A|1127, 8SYL|1|A|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SYL_039 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0599
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8SYL|1|A|G|1024
8SYL|1|A|G|1025
8SYL|1|A|G|1026
8SYL|1|A|A|1027
8SYL|1|A|A|1028
8SYL|1|A|A|1029
8SYL|1|A|C|1030
*
8SYL|1|A|G|1124
8SYL|1|A|G|1125
8SYL|1|A|A|1126
8SYL|1|A|A|1127
8SYL|1|A|G|1128
8SYL|1|A|A|1129
8SYL|1|A|U|1130
8SYL|1|A|G|1131
8SYL|1|A|U|1132
8SYL|1|A|A|1133
8SYL|1|A|A|1134
8SYL|1|A|C|1135
8SYL|1|A|G|1136
8SYL|1|A|G|1137
8SYL|1|A|G|1138
8SYL|1|A|G|1139
8SYL|1|A|C|1140
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain D
- 50S ribosomal protein L3
- Chain L
- 50S ribosomal protein L13
- Chain O
- 50S ribosomal protein L16
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