IL_8SYL_042

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

8SYL|1|A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SYL|1|A|C|1043
8SYL|1|A|C|1044
8SYL|1|A|C|1045
8SYL|1|A|A|1046
8SYL|1|A|G|1047
8SYL|1|A|A|1048
8SYL|1|A|C|1049
8SYL|1|A|A|1050
8SYL|1|A|G|1051
8SYL|1|A|C|1052
*
8SYL|1|A|G|1107
8SYL|1|A|U|1108
8SYL|1|A|C|1109
8SYL|1|A|G|1110
8SYL|1|A|A|1111
8SYL|1|A|G|1112

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6