IL_8SYL_052

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8SYL|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_052 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.0885

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8SYL|1|A|C|1417
8SYL|1|A|G|1418
8SYL|1|A|A|1419
8SYL|1|A|A|1420
8SYL|1|A|G|1421
*
8SYL|1|A|C|1577
8SYL|1|A|U|1578
8SYL|1|A|A|1579
8SYL|1|A|A|1580
8SYL|1|A|G|1581

Current chains

Chain A

23S Ribosomal RNA

Nearby chains