IL_8SYL_066

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8SYL|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_066 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1045

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8SYL|1|A|U|1712
8SYL|1|A|A|1713
8SYL|1|A|U|1714
8SYL|1|A|G|1715
8SYL|1|A|U|1716
8SYL|1|A|A|1717
8SYL|1|A|G|1718
*
8SYL|1|A|U|1742
8SYL|1|A|G|1743
8SYL|1|A|A|1744
8SYL|1|A|A|1745
8SYL|1|A|A|1746

Current chains

Chain A

23S Ribosomal RNA

Nearby chains