IL_8SYL_073

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_073 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1138

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

8SYL|1|A|U|1864
8SYL|1|A|U|1865
8SYL|1|A|A|1866
8SYL|1|A|G|1867
*
8SYL|1|A|C|1874
8SYL|1|A|G|1875
8SYL|1|A|A|1876
8SYL|1|A|A|1877
8SYL|1|A|G|1878

Current chains

Chain A

23S Ribosomal RNA

Nearby chains