IL_8SYL_087

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

8SYL|1|A|U|2111, 8SYL|1|A|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_087 not in the Motif Atlas

Homologous match to IL_8VTW_084

Geometric discrepancy: 0.5945

The information below is about IL_8VTW_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SYL|1|A|G|2110
8SYL|1|A|U|2111
8SYL|1|A|G|2112
8SYL|1|A|U|2113
8SYL|1|A|A|2114
8SYL|1|A|G|2115
8SYL|1|A|G|2116
8SYL|1|A|A|2117
8SYL|1|A|U|2118
8SYL|1|A|A|2119
8SYL|1|A|G|2120
*
8SYL|1|A|C|2178
8SYL|1|A|C|2179

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain y

Transfer RNA; tRNA