3D structure

PDB id
8SYL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CG*CAG
Length
5 nucleotides
Bulged bases
8SYL|1|A|A|2602
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8SYL_106 not in the Motif Atlas
Geometric match to IL_7RQB_101
Geometric discrepancy: 0.0737
The information below is about IL_7RQB_101
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_37497.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
118

Unit IDs

8SYL|1|A|C|2591
8SYL|1|A|G|2592
*
8SYL|1|A|C|2601
8SYL|1|A|A|2602
8SYL|1|A|G|2603

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain Y
50S ribosomal protein L27
Chain w
Transfer RNA; tRNA
Chain x
Transfer RNA; tRNA

Coloring options:


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