IL_8SYL_141

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_141 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1145

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8SYL|1|a|U|409
8SYL|1|a|G|410
8SYL|1|a|A|411
8SYL|1|a|A|412
8SYL|1|a|G|413
8SYL|1|a|A|414
8SYL|1|a|A|415
8SYL|1|a|G|416
*
8SYL|1|a|U|427
8SYL|1|a|G|428
8SYL|1|a|U|429
8SYL|1|a|A|430
8SYL|1|a|A|431
8SYL|1|a|A|432
8SYL|1|a|G|433

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4