IL_8SYL_167

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_167 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1467

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8SYL|1|a|G|1050
8SYL|1|a|C|1051
8SYL|1|a|U|1052
*
8SYL|1|a|G|1206
8SYL|1|a|2MG|1207
8SYL|1|a|C|1208

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain n

30S ribosomal protein S14

Chain w

Transfer RNA; tRNA