IL_8SYL_181
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GU(5MC)AC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8SYL_181 not in the Motif Atlas
- Homologous match to IL_4LFB_058
- Geometric discrepancy: 0.2118
- The information below is about IL_4LFB_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8SYL|1|a|G|1405
8SYL|1|a|U|1406
8SYL|1|a|5MC|1407
8SYL|1|a|A|1408
8SYL|1|a|C|1409
*
8SYL|1|a|G|1491
8SYL|1|a|A|1492
8SYL|1|a|A|1493
8SYL|1|a|G|1494
8SYL|1|a|U|1495
8SYL|1|a|C|1496
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain v
- M-F-Stop mRNA
- Chain w
- Transfer RNA; tRNA
- Chain x
- Transfer RNA; tRNA
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