IL_8SYL_185

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_185 not in the Motif Atlas

Homologous match to IL_5J7L_064

Geometric discrepancy: 0.5104

The information below is about IL_5J7L_064

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8SYL|1|a|U|1440
8SYL|1|a|A|1441
8SYL|1|a|G|1442
*
8SYL|1|a|C|1460
8SYL|1|a|G|1461

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain R

50S ribosomal protein L19

Chain t

30S ribosomal protein S20