IL_8SYL_189

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

8SYL|1|A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SYL_189 not in the Motif Atlas

Geometric match to IL_4WF9_044

Geometric discrepancy: 0.2806

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

8SYL|1|A|G|880
8SYL|1|A|G|881
8SYL|1|A|G|882
*
8SYL|1|A|U|894
8SYL|1|A|U|895
8SYL|1|A|A|896
8SYL|1|A|C|897

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain w

Transfer RNA; tRNA