IL_8SYL_196

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUUGAAGUG*CAUGGAG

Length

17 nucleotides

Bulged bases

8SYL|1|A|U|2132, 8SYL|1|A|A|2135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8SYL|1|A|C|2129
8SYL|1|A|U|2130
8SYL|1|A|U|2131
8SYL|1|A|U|2132
8SYL|1|A|G|2133
8SYL|1|A|A|2134
8SYL|1|A|A|2135
8SYL|1|A|G|2136
8SYL|1|A|U|2137
8SYL|1|A|G|2138
*
8SYL|1|A|C|2153
8SYL|1|A|A|2154
8SYL|1|A|U|2155
8SYL|1|A|G|2156
8SYL|1|A|G|2157
8SYL|1|A|A|2158
8SYL|1|A|G|2159

Current chains

Chain A

23S Ribosomal RNA

Nearby chains