IL_8T2X_025

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2X_025 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1048

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8T2X|1|A1|C|758
8T2X|1|A1|U|759
8T2X|1|A1|G|760
8T2X|1|A1|A|761
8T2X|1|A1|U|762
8T2X|1|A1|G|763
*
8T2X|1|A1|C|768
8T2X|1|A1|G|769
8T2X|1|A1|G|770
8T2X|1|A1|A|771
8T2X|1|A1|U|772
8T2X|1|A1|G|773

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain Aa

60S ribosomal protein L28

Chain Ao

60S ribosomal protein L42-A