IL_8T2X_084
3D structure
- PDB id
- 8T2X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- CUGAAUG*CGCG
- Length
- 11 nucleotides
- Bulged bases
- 8T2X|1|A1|A|2207, 8T2X|1|A1|A|2208
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T2X_084 not in the Motif Atlas
- Homologous match to IL_9PN5_084
- Geometric discrepancy: 0.4309
- The information below is about IL_9PN5_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89862.3
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 8
Unit IDs
8T2X|1|A1|C|2204
8T2X|1|A1|U|2205
8T2X|1|A1|G|2206
8T2X|1|A1|A|2207
8T2X|1|A1|A|2208
8T2X|1|A1|U|2209
8T2X|1|A1|G|2210
*
8T2X|1|A1|C|2235
8T2X|1|A1|G|2236
8T2X|1|A1|C|2237
8T2X|1|A1|G|2238
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain E
- RPL1A isoform 1
- Chain eI
- Eukaryotic translation initiation factor 5A
Coloring options: