IL_8T2X_183

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

GCUAACCUUGAGUCC*GCUCUUGGCGAAC

Length

28 nucleotides

Bulged bases

8T2X|1|B5|C|704, 8T2X|1|B5|U|705, 8T2X|1|B5|A|707, 8T2X|1|B5|C|708, 8T2X|1|B5|U|710, 8T2X|1|B5|U|711, 8T2X|1|B5|G|712, 8T2X|1|B5|G|714, 8T2X|1|B5|C|716, 8T2X|1|B5|C|724, 8T2X|1|B5|U|727, 8T2X|1|B5|C|731, 8T2X|1|B5|A|733, 8T2X|1|B5|A|734

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T2X|1|B5|G|703
8T2X|1|B5|C|704
8T2X|1|B5|U|705
8T2X|1|B5|A|706
8T2X|1|B5|A|707
8T2X|1|B5|C|708
8T2X|1|B5|C|709
8T2X|1|B5|U|710
8T2X|1|B5|U|711
8T2X|1|B5|G|712
8T2X|1|B5|A|713
8T2X|1|B5|G|714
8T2X|1|B5|U|715
8T2X|1|B5|C|716
8T2X|1|B5|C|717
*
8T2X|1|B5|G|723
8T2X|1|B5|C|724
8T2X|1|B5|U|725
8T2X|1|B5|C|726
8T2X|1|B5|U|727
8T2X|1|B5|U|728
8T2X|1|B5|G|729
8T2X|1|B5|G|730
8T2X|1|B5|C|731
8T2X|1|B5|G|732
8T2X|1|B5|A|733
8T2X|1|B5|A|734
8T2X|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A