IL_8T2X_216

3D structure

PDB id

8T2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

AAAUA*UUCUU

Length

10 nucleotides

Bulged bases

8T2X|1|B5|A|1346, 8T2X|1|B5|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T2X|1|B5|A|1344
8T2X|1|B5|A|1345
8T2X|1|B5|A|1346
8T2X|1|B5|U|1347
8T2X|1|B5|A|1348
*
8T2X|1|B5|U|1377
8T2X|1|B5|U|1378
8T2X|1|B5|C|1379
8T2X|1|B5|U|1380
8T2X|1|B5|U|1381

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BD

RPS3 isoform 1

Chain BQ

40S ribosomal protein S16-A

Chain BT

40S ribosomal protein S19-A

Chain BU

RPS20 isoform 1

Chain Bg

Guanine nucleotide-binding protein subunit beta-like protein