IL_8T2Y_012

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

8T2Y|1|A1|U|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Y_012 not in the Motif Atlas

Homologous match to IL_8C3A_013

Geometric discrepancy: 0.0859

The information below is about IL_8C3A_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8T2Y|1|A1|G|189
8T2Y|1|A1|U|190
8T2Y|1|A1|U|191
*
8T2Y|1|A1|A|204
8T2Y|1|A1|C|205

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AC

RPL4A isoform 1

Chain AY

60S ribosomal protein L26-A