IL_8T2Y_023

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8T2Y|1|A1|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Y_023 not in the Motif Atlas

Homologous match to IL_8P9A_252

Geometric discrepancy: 0.0757

The information below is about IL_8P9A_252

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

8T2Y|1|A1|C|752
8T2Y|1|A1|C|753
*
8T2Y|1|A1|G|779
8T2Y|1|A1|A|780
8T2Y|1|A1|G|781

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AQ

60S ribosomal protein L18-A

Chain Aa

60S ribosomal protein L28

Chain Ab

RPL29 isoform 1