IL_8T2Y_086

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Y_086 not in the Motif Atlas

Geometric match to IL_8C3A_094

Geometric discrepancy: 0.0679

The information below is about IL_8C3A_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8T2Y|1|A1|G|2276
8T2Y|1|A1|C|2277
*
8T2Y|1|A1|G|2307
8T2Y|1|A1|C|2308
8T2Y|1|A1|A|2309
8T2Y|1|A1|U|2310

Current chains

Chain A1

25S rRNA

Nearby chains

Chain An

60S ribosomal protein L41-A

Chain tP

Transfer RNA; tRNA