3D structure

PDB id
8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UACGAAUAAG*CGCUGAA
Length
17 nucleotides
Bulged bases
8T2Y|1|A1|A|3180, 8T2Y|1|A1|A|3186, 8T2Y|1|A1|U|3207, 8T2Y|1|A1|A|3209
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8T2Y_121 not in the Motif Atlas
Homologous match to IL_8P9A_352
Geometric discrepancy: 0.0967
The information below is about IL_8P9A_352
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42231.1
Basepair signature
cWW-L-R-L-cWW-L-cWW-cSS-L
Number of instances in this motif group
2

Unit IDs

8T2Y|1|A1|U|3179
8T2Y|1|A1|A|3180
8T2Y|1|A1|C|3181
8T2Y|1|A1|G|3182
8T2Y|1|A1|A|3183
8T2Y|1|A1|A|3184
8T2Y|1|A1|U|3185
8T2Y|1|A1|A|3186
8T2Y|1|A1|A|3187
8T2Y|1|A1|G|3188
*
8T2Y|1|A1|C|3204
8T2Y|1|A1|G|3205
8T2Y|1|A1|C|3206
8T2Y|1|A1|U|3207
8T2Y|1|A1|G|3208
8T2Y|1|A1|A|3209
8T2Y|1|A1|A|3210

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AE
60S ribosomal protein L6-A
Chain AH
60S ribosomal protein L9-A
Chain AM
60S ribosomal protein L14-A
Chain AO
60S ribosomal protein L16-A
Chain AS
60S ribosomal protein L20
Chain Af
60S ribosomal protein L33-A

Coloring options:


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