IL_8T2Y_135
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T2Y_135 not in the Motif Atlas
- Homologous match to IL_8P9A_365
- Geometric discrepancy: 0.1214
- The information below is about IL_8P9A_365
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18487.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8T2Y|1|A3|G|21
8T2Y|1|A3|A|22
8T2Y|1|A3|A|23
8T2Y|1|A3|A|24
8T2Y|1|A3|G|25
8T2Y|1|A3|C|26
8T2Y|1|A3|A|27
*
8T2Y|1|A3|U|53
8T2Y|1|A3|U|54
8T2Y|1|A3|A|55
8T2Y|1|A3|A|56
8T2Y|1|A3|G|57
8T2Y|1|A3|C|58
Current chains
- Chain A3
- 5s rRNA
Nearby chains
- Chain AD
- RPL5 isoform 1
- Chain AJ
- RPL11A isoform 1
Coloring options: