IL_8T2Y_139
3D structure
- PDB id
- 8T2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 8T2Y|1|A3|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8T2Y_139 not in the Motif Atlas
- Homologous match to IL_8P9A_369
- Geometric discrepancy: 0.0792
- The information below is about IL_8P9A_369
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8T2Y|1|A3|A|72
8T2Y|1|A3|C|73
8T2Y|1|A3|C|74
8T2Y|1|A3|G|75
8T2Y|1|A3|A|76
8T2Y|1|A3|G|77
8T2Y|1|A3|U|78
8T2Y|1|A3|A|79
8T2Y|1|A3|G|80
*
8T2Y|1|A3|C|100
8T2Y|1|A3|G|101
8T2Y|1|A3|A|102
8T2Y|1|A3|A|103
8T2Y|1|A3|A|104
8T2Y|1|A3|C|105
8T2Y|1|A3|U|106
Current chains
- Chain A3
- 5s rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AF
- 60S ribosomal protein L7-A
- Chain AI
- RPL10 isoform 1
- Chain AS
- 60S ribosomal protein L20
- Chain AT
- 60S ribosomal protein L21-A
Coloring options: