IL_8T2Y_169

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

8T2Y|1|B5|G|539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Y_169 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.32

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8T2Y|1|B5|G|514
8T2Y|1|B5|A|515
8T2Y|1|B5|G|516
*
8T2Y|1|B5|C|536
8T2Y|1|B5|G|537
8T2Y|1|B5|A|538
8T2Y|1|B5|G|539
8T2Y|1|B5|G|540
8T2Y|1|B5|A|541
8T2Y|1|B5|A|542
8T2Y|1|B5|C|543

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain Be

40S ribosomal protein S30-A