IL_8T2Y_175

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8T2Y|1|B5|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Y_175 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.0804

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8T2Y|1|B5|G|616
8T2Y|1|B5|U|617
8T2Y|1|B5|U|618
8T2Y|1|B5|A|619
8T2Y|1|B5|A|620
8T2Y|1|B5|A|621
8T2Y|1|B5|A|622
*
8T2Y|1|B5|U|1104
8T2Y|1|B5|C|1105

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BX

40S ribosomal protein S23-A

Chain Ba

RPS26B isoform 1