IL_8T2Y_179

3D structure

PDB id

8T2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCUAACCUUGAGUCC*GCUCUUGGCGAAC

Length

28 nucleotides

Bulged bases

8T2Y|1|B5|C|704, 8T2Y|1|B5|U|705, 8T2Y|1|B5|A|706, 8T2Y|1|B5|A|707, 8T2Y|1|B5|C|708, 8T2Y|1|B5|C|709, 8T2Y|1|B5|U|710, 8T2Y|1|B5|U|711, 8T2Y|1|B5|G|712, 8T2Y|1|B5|C|716, 8T2Y|1|B5|C|724, 8T2Y|1|B5|U|727, 8T2Y|1|B5|C|731, 8T2Y|1|B5|A|733, 8T2Y|1|B5|A|734

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T2Y|1|B5|G|703
8T2Y|1|B5|C|704
8T2Y|1|B5|U|705
8T2Y|1|B5|A|706
8T2Y|1|B5|A|707
8T2Y|1|B5|C|708
8T2Y|1|B5|C|709
8T2Y|1|B5|U|710
8T2Y|1|B5|U|711
8T2Y|1|B5|G|712
8T2Y|1|B5|A|713
8T2Y|1|B5|G|714
8T2Y|1|B5|U|715
8T2Y|1|B5|C|716
8T2Y|1|B5|C|717
*
8T2Y|1|B5|G|723
8T2Y|1|B5|C|724
8T2Y|1|B5|U|725
8T2Y|1|B5|C|726
8T2Y|1|B5|U|727
8T2Y|1|B5|U|728
8T2Y|1|B5|G|729
8T2Y|1|B5|G|730
8T2Y|1|B5|C|731
8T2Y|1|B5|G|732
8T2Y|1|B5|A|733
8T2Y|1|B5|A|734
8T2Y|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A