IL_8T2Z_064

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

8T2Z|1|A1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_064 not in the Motif Atlas

Homologous match to IL_8C3A_483

Geometric discrepancy: 0.3549

The information below is about IL_8C3A_483

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25360.1

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

8T2Z|1|A1|G|1623
8T2Z|1|A1|G|1624
*
8T2Z|1|A1|U|1820
8T2Z|1|A1|U|1821
8T2Z|1|A1|C|1822

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ag

60S ribosomal protein L34-A

Chain Ak

RPL38 isoform 1