IL_8T2Z_127

3D structure

PDB id

8T2Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, POST

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

8T2Z|1|A1|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8T2Z_127 not in the Motif Atlas

Homologous match to IL_8P9A_358

Geometric discrepancy: 0.3102

The information below is about IL_8P9A_358

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8T2Z|1|A1|C|3324
8T2Z|1|A1|G|3325
*
8T2Z|1|A1|U|3381
8T2Z|1|A1|U|3382
8T2Z|1|A1|G|3383

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain Ad

60S ribosomal protein L31-A